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Notes from February 15th small team call:

  • Warning: BioCypher may not be W3C compliant, and needs discussion in the large team before adoption - or consider alternatives - so far this is the most important question.

    • This team cannot make progress until we make the decision about BioCypher

  • Focus on smaller, cheaper models first? Pick a handful of models, at various size points, look up performance on general benchmarks

  • What is the task → that dictates the choice of the benchmarks

  • Verify that BioChatter has benchmarks for writing cypher queries

  • How important is each benchmark? Perhaps create a linear model that combines multiple scores into a single score

  • Helena: This benchmark answers the question “what are the best embeddings” across a variety of tasks: https://huggingface.co/spaces/mteb/leaderboard

  • Convert into a weekly call at the same time on Thursdays for the next six weeks