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Technical Documentation
HELM Notation Specification
Editor
HAbE (HELM Antibody Editor)
Technical Presentations
- HELM Notation Overview
- Code Orientation
- Exchangeable HELM - quattro research
- HELM for antibodies - Roche
- Search proof of concept - Cambridge University
General Information
General presentations
- BioIT World 30th April 2014 - Roche extensions to HELM to support antibodies
- BioIT World 29th April 2014 - What HELM is and what the Pistoia Alliance project has achieved
- BioIT World Reception 29th April 2014 - Short overview of HELM and single slides from organisations using HELM
- SLAS meeting 11th January 2014
- ICIC 14th October 2013
- London Lunch and Learn 30th May 2013
Partner presentations
- Extending HELM support for antibodies – Roche
- Pipeline Pilot and HELM – Biovia
- Sugar and Splice support for HELM - NextMove Software
- Registration systems - ChemAxon
Press Releases
- Exchangeable HELM Release Announcement 1st July 2014
- Exchangeable HELM Work Commences 3rd February 2014
- ChEMBL Collaboration Announcement 4th February 2014
- HELM Launch 18th June 2013
Legal Documents
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This is the old HELM Wiki Space. Please go to http://wiki.openhelm.org/ for the latest information |
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HELM is both a notation, and a set of tools and applications that implement the notation. The tools are available as open source software released under the permissive MIT licence.
All the HELM code is on GitHub.
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From September 2018 new changes to the HELM code have used Java 8 and may include some features not supported by Java 7. Please take this into account in your HELM plans. Specific details will be available in the repository release notes. |
This wiki is the main source for information about HELM and its tools. Please have a look around and get in touch if you can’t find what you need, or want to connect with other HELM enthusiasts.
Try out our free open-source web-editor
HELM has a wide and growing ecosystem and can be used at various levels: from facilitating information exchange between organisations to forming the foundation of your biologics infrastructure.
External information on HELM
BioIT World article - Universal language: The Pistoia Alliance Takes on Indescribable Biology
GSK use of HELM for registration Pistoia-Alliance-HELM-GSK-BIOVIA-Case-Study.pdf
Printable Leaflet
A history and overview of the HELM project is described in this leaflet.
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Forum
Please use the issue list in GitHub to post general HELM questions (and feel free to add answers to other peoples!).
Code defects should be discussed in the respective repository.
Code Orientation
If you want to get started with the code, and need a general overview please look through the code orientation video below. The slides are included for completeness, but much of the information was a live demo, so please note that they do not contain everything.
More detail is available in the application specific pages.
Wikipedia
We are even on Wikipedia! Not sure who added us, but many thanks to whoever it was.
https://en.wikipedia.org/wiki/Hierarchical_Editing_Language_for_Macromolecules
FAIR
HELM has an entry on the FAIR resource https://fairsharing.org/bsg-s001222/ and is pleased to support the initiative to make information Findable, Accessible, Interoperable and Reusable.