HELM Resources



 


 

HELM is both a notation, and a set of tools and applications that implement the notation. The tools are available as open source software released under the permissive MIT licence


All the HELM code is on GitHub.


This wiki is the main source for information about HELM and its tools. Please have a look around and get in touch if you can’t find what you need, or want to connect with other HELM enthusiasts.


Try out our free open-source web-editor


HELM has a wide and growing ecosystem and can be used at various levels: from facilitating information exchange between organisations to forming the foundation of your biologics infrastructure. 


External information on HELM


BioIT World article - Universal language: The Pistoia Alliance Takes on Indescribable Biology


GSK use of HELM for registration Pistoia-Alliance-HELM-GSK-BIOVIA-Case-Study.pdf


Printable Leaflet


A history and overview of the HELM project is described in this leaflet.


 


Forum

Please use the issue list in GitHub to post general HELM questions (and feel free to add answers to other peoples!).

 Code defects should be discussed in the respective repository.


Code Orientation 

If you want to get started with the code, and need a general overview please look through the code orientation video below. The slides are included for completeness, but much of the information was a live demo, so please note that they do not contain everything.

 More detail is available in the application specific pages.


Wikipedia

We are even on Wikipedia! Not sure who added us, but many thanks to whoever it was.

https://en.wikipedia.org/wiki/Hierarchical_Editing_Language_for_Macromolecules


FAIR

HELM has an entry on the FAIR resource https://fairsharing.org/bsg-s001222/ and is pleased to support the initiative to make information Findable, Accessible, Interoperable and Reusable.