All about HAbE
HELM Antibody Editor: What is it, what can it do? (slides)
Extended Overview of HAbE (slides)
User guides
User guide for the HELM Antibody Editor (document)
Compiled code - try it for yourself
HELMAntibodyEditor_1.1 - linux.zip
HELMAntibodyEditor_1.1 - macosX.zip
HELMAntibodyEditor_1.1 - win.zip
Source Code
Source code on GitHub
Technical information
How to connect to the domain / mutation / rule libraries when located in a database
Custom Master Libraries in HAbE v1.1.pdf
How to write plugins e.g. to store the antibody constructs in databases instead of XML files
How to write plugins for HAbE v1.1.pdf
Licenses and restrictions
HELM is an open source project released under the MIT license. However it currently has some dependencies on third party tools.
- HELM Editor requires yFiles for Java version 2.6 or higher and GraphML extension from yWorks. If you wish to use the compiled software directly there is no need to buy a licence. If you wish to develop the software for your own use, trial versions of such libraries can be downloaded from yWorks at www.yworks.com. You need to update the ant build file with regard to yfiles.dir and jar file names before compiling and running the project.
The HELM Toolkit requires MarvinBeans version 5.0 or higher from ChemAxon. A copy of the required library (MarvinBeans-5.0.jar) is included for your convenience. ChemAxon has graciously agreed to provide a royalty-free license for the utilization of MarvinBeans directly through the HELM editor and notation toolkit (specifically for operations pertaining to the chemical representation of HELM monomers and macromolecules.) Please contact Cassell Essell (cessell@chemaxon.com) to obtain this license. Utilization of the MarvinBeans library outside of the aforementioned scope and beyond a trial basis requires the procurement of a regular MarvinBeans license.
The project is actively working to remove these restrictions. We welcome anyone who wishes to contribute to the project by replacing any of these components.