Bibliography
This is the archive of presentations and publications from HELM team members and others.
2021 Activities
ACS National Meeting 15 April
- Jinbo Lee presented "Monomer.org - A Scientific Community Platform for Sharing HELM Monomer Libraries and Translating HELM Macromolecules"
2020 Activities
Pistoia Alliance Virtual Conference 23rd October 2020
- Tianhong Zhang presented “What’s the structure of that biomolecule?”
2019 Activities
KNIME blog 9th September 2019
- Ken Longo wrote a blog "Accessing the HELM monomer library with KNIME"
Pistoia Alliance European conference 13 March 2019
- Bernhard Schirm presented "HELM in Action: Complex oligonucleotides"
2018 Activities
ACS National Meeting 19 August Boston
Sergio Rotstein presented "HELM: Continuing to set the standard for biomolecular representation "
- Yohann Potier presented "Registering chemically modified oligonucleotides: Implementations and challenges "
- Markus Weisser presented "Similarity analysis of oligonucleotides based on HELM notation"
- Jeff Milton presented "monomer.org: The global hub for (bio) polymer informatics. "
- Noel O'Boyle presented "Building a bridge between human-readable and machine-readable representations of biopolymers."
Pistoia Alliance European Meeting 14 March London
- HELM poster and a short presentation from Sergio Rotstein.
2017 Activities
ACS 20-22nd August Washington DC
- Matthias Nolte presented "HELM: An open standard for biomolecule structure representation and exchange"
- Perkin Elmer announced their adoption of HELM in ChemDraw.
RSC CICAG Liverpool 22nd June 2017
- Claire Bellamy presented "HELM Setting the standard for biomolecular exchange"
HELM Software for Biopolymers, Jeff Milton et al, Journal of Chemical Information and Modelling, 2017. 57(6), 123-1239
http://pubs.acs.org/doi/abs/10.1021/acs.jcim.6b00442
ACS San Francisco 2nd-6th April 2017
- Jeff Milton presented " HELM: A line notation and software infrastructure for managing biopolymers"
InChI Meeting at the EMBL-EBI 20-21st March 2017
- Claire Bellamy presented "Why large molecule standards are important to pharma" in the main session.
- Markus Weisser presented "Representation of ambiguous biomolecules using the Enhanced Standard HELM 2.0" in the large molecules group.
Press release 18th January 2017
2016 Activities
BioIT World 5th April 2016:
- Sergio Rotstein presented “Registration and Beyond” in work stream 4: Data Management for Biologics.
- Markus Weisser presented "Embracing Ambiguity" as the selected poster presentation in the ‘Data and storage management solutions’ track.
- Markus Weisser presented the poster “Embracing Ambiguity”
11th Laboratory Informatics Summit Philadelphia 25-27th January
- Leah O’Brien and Sergio Rostein led the panel discussion entitled "Exploring Pre-Competitive Opportunities in Laboratory Informatics Settings” and mentioned HELM.
2015 Activities
13th Annual Pharmaceutical IT Congress, 23–24th September 2015
- Sergio Rotstein gave a talk entitled: “Pistoia Alliance HELM Project: Setting the Standard for Biomolecular Data Exchange”
250th ACS National Meeting & Exposition, 16-20th August 2015
- Tianhong Zhang gave a talk entitled: “HELM an Open Standard for Complex Polymeric Structures”
- Carmen Nitsche spoke in the CINF Division Symposium on “Data sharing in life sciences R&D” which mentioned HELM briefly.
PEGS Biophysical Analysis Conference, 6th May 2015
- Sergio Rotstein spoke on “Pistoia Alliance HELM Project: Setting the Standard for Biomolecular Data Exchange” in Stream 5b: Biophysical Analysis of Biotherapeutics
BioIT World 5th April 2015:
SLAS Webinar, 31st March 2015
- Tianhong Zhang gave a talk entitled: “HELM: Setting the Standard for Biomolecular Data Exchange”
Molecular Medicine Tri-con February 2015
- Sergio Rotstein spoke on “Pistoia Alliance HELM Project: An Open Standard for the Representation of Complex Biomolecules”
2014 Activities
IUPAC Bio-InChi kick off meeting 27th-28th October 2014
- Sergio gave an overview of HELM alongside talks from others on large molecule representations.
EBI Industry forum September 23rd-24th 2014
- Sergio Rotstein presented “HELM”
- Stefan Klostermann presented “ADCs”
- Anna Gaulton presented “Biotherapeutics in ChEMBL and the implementation of HELM”
University of Cambridge 22nd September 2014
- A HELM multipart seminar was given by Sergio Rotstein, Andrea Chlebikova and Stefan Klostermann
HELM Showcase Webinar Wednesday 9th July 2014
Press release 1st July 2014
BioIT World 30th April 2014
- Stefan Klostermann presented: “Extending HELM to antibody space to register complex biologics"
- Sergio Rotstein spoke on "Pistoia Alliance HELM Project: An Open Standard for the Representation of Complex Biomolecules"
- The project held a reception which included short overview of HELM and single slide updates from: ChemAxon, EBI, Accelrys, BMS, Roche
Press release 4th February 2014
SLAS meeting 11th January 2014
- Roland Knispel presented "HELM: an open standard for representing large molecules"
2013 Activities
ICIC 14th October 2013
- Alex Drijver presented: “Pistoia Alliance and HELM: An open information standard for the molecular representation of biologics”
Press release 18th June 2013
London Lunch and Learn 30th May 2013
- Sergio Rostein presented: “What About the Big Guys? The emerging HELM standard for macromolecular representation and the Pistoia Alliance"